mirror of
https://github.com/MillironX/nf-core_modules.git
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682f789f93
* Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums
52 lines
2.2 KiB
YAML
52 lines
2.2 KiB
YAML
- name: spades test_spades_single_end
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command: nextflow run ./tests/modules/spades -entry test_spades_single_end -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: e5eab229363a906954a07df00e2495a6
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- path: output/spades/test.contigs.fa.gz
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md5sum: 64f6b339872b934138c6efd6baa445f4
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 64f6b339872b934138c6efd6baa445f4
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- path: output/spades/test.spades.log
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- name: spades test_spades_paired_end
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command: nextflow run ./tests/modules/spades -entry test_spades_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: c8614fb69907ae832a1359a054af240f
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- path: output/spades/test.contigs.fa.gz
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md5sum: eab5165b3cda96c235aaa1388010cb27
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: spades test_spades_illumina_nanopore
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command: nextflow run ./tests/modules/spades -entry test_spades_illumina_nanopore -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: e438534f14e107f005efdd659adeba6a
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- path: output/spades/test.contigs.fa.gz
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md5sum: 027b0e54bfd8f4bc359e751e094133ef
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 027b0e54bfd8f4bc359e751e094133ef
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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- name: spades test_spades_illumina_pacbio
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command: nextflow run ./tests/modules/spades -entry test_spades_illumina_pacbio -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
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tags:
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- spades
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files:
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- path: output/spades/test.assembly.gfa.gz
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md5sum: 22f92cbade8f25be3ac170eaf09f4c7b
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- path: output/spades/test.contigs.fa.gz
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md5sum: bb2d294a5752a6f3a208834b8799ec98
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- path: output/spades/test.scaffolds.fa.gz
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md5sum: 65aa6e3364925ec617fffda3e84b4cbc
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- path: output/spades/test.spades.log
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- path: output/spades/warnings.log
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