millironx/nf-core_modules
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nf-core_modules/tests/modules/gatk4
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FriederikeHanssen 50eafb19c6
Update version for log4j vulnerability (#1176) 
* Update version for log4j vulnerability

* update checksums

* update checksums

* update checksums

* Remove todo string

* remove werid output paths

* remove werid output paths

* remove werid output paths

* Update various checksums

* Update various checksums

* Remove unstable md5sums

* Update md5sums

* Fix pileupsummary

* Fix genotypegvcfs

* Update test files mutect2

* hm genotypevcf updated again

* Update some mutect checksums and whatnot

* Fix last mutect checksum

* Apply suggestion to use mtochondria data instead
2021-12-20 17:10:49 +01:00
..
applybqsr Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
applyvqsr Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
baserecalibrator Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
bedtointervallist Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
calculatecontamination Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
createsequencedictionary Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
createsomaticpanelofnormals Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
estimatelibrarycomplexity Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
fastqtosam Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
filtermutectcalls Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
gatherbqsrreports Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genomicsdbimport Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genotypegvcfs Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
getpileupsummaries Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
haplotypecaller Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
indexfeaturefile Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
intervallisttools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
learnreadorientationmodel Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
markduplicates Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mergebamalignment Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mergevcfs Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mutect2 Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
revertsam Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
samtofastq Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
splitncigarreads Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
variantfiltration Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
variantrecalibrator add module: Variantrecalibrator (#1088) 2021-12-16 10:54:49 +00:00