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1840289068
* initiate agrvate module * remove todos [ci skip] * remove todos and fix containers [ci skip] * ready for testing Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.3 KiB
YAML
46 lines
1.3 KiB
YAML
name: agrvate
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description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
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keywords:
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- fasta
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- virulence
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- Staphylococcus aureus
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tools:
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- agrvate:
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description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
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homepage: https://github.com/VishnuRaghuram94/AgrVATE
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documentation: https://github.com/VishnuRaghuram94/AgrVATE
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tool_dev_url: https://github.com/VishnuRaghuram94/AgrVATE
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: A Staphylococcus aureus fasta file.
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- summary:
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type: file
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description: A summary of the agrvate assessement
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pattern: "*-summary.tab"
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- results_dir:
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type: directory
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description: Results of the agrvate assessement
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pattern: "*-results"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@abhi18av"
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