mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
52 lines
1.4 KiB
YAML
52 lines
1.4 KiB
YAML
name: bbmap_align
|
|
description: write your description here
|
|
keywords:
|
|
- align
|
|
- map
|
|
- fasta
|
|
- genome
|
|
- reference
|
|
tools:
|
|
- bbmap:
|
|
description: BBMap is a short read aligner, as well as various other bioinformatic tools.
|
|
homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
|
|
documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ['UC-LBL license (see package)']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
respectively.
|
|
- ref:
|
|
type: file
|
|
description: |
|
|
Either "ref" a directory containing an index, the name of another directory
|
|
with a "ref" subdirectory containing an index or the name of a fasta formatted
|
|
nucleotide file containg the reference to map to.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- bam:
|
|
type: file
|
|
description: BAM file
|
|
pattern: "*.{bam}"
|
|
|
|
authors:
|
|
- "@erikrikarddaniel"
|