mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
67cc3bd116
* draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: bcftools_concat
|
|
description: Concatenate VCF files
|
|
keywords:
|
|
- variant calling
|
|
- concat
|
|
- bcftools
|
|
- VCF
|
|
|
|
tools:
|
|
- concat:
|
|
description: |
|
|
Concatenate VCF files.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcfs:
|
|
type: files
|
|
description: |
|
|
List containing 2 or more vcf files
|
|
e.g. [ 'file1.vcf', 'file2.vcf' ]
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF concatenated output file
|
|
pattern: "*.{vcf.gz}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@abhi18av"
|