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67cc3bd116
* draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: bcftools_concat
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description: Concatenate VCF files
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keywords:
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- variant calling
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- concat
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- bcftools
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- VCF
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tools:
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- concat:
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description: |
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Concatenate VCF files.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: http://www.htslib.org/doc/bcftools.html
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doi: 10.1093/bioinformatics/btp352
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcfs:
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type: files
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description: |
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List containing 2 or more vcf files
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e.g. [ 'file1.vcf', 'file2.vcf' ]
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF concatenated output file
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pattern: "*.{vcf.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@abhi18av"
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