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0d53a34eed
* initiate agrvate module * remove todos [ci skip] * initiate fastani draft [ci skip] * clean stubs [ci skip] * interim commit [ci skip] * accomodate the batch/per-sample processing [ci skip] * use the meta map [ci skip] * run first test [ci skip] * remove extra spaces [ci skip] * change output file name [ci skip] * update the expected output [ci skip] * update the files used for test [ci skip] * fix typo [ci skip] * test passing [ci skip] * update the description * remove extra files * accomodate CR suggestions [ci skip] Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * accomodate CR suggestions [ci skip] Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * accomodate CR suggestions [ci skip] Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * use meta map for batch analysis * fix the tests * rely upon tuples * Apply suggestions from code review * Update main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
name: fastani
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description: write your description here
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keywords:
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- fastani
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tools:
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- fastani:
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description: FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
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homepage: https://github.com/ParBLiSS/FastANI
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documentation: https://github.com/ParBLiSS/FastANI
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tool_dev_url: https://github.com/ParBLiSS/FastANI
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doi: 10.1038/s41467-018-07641-9
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licence: ['Apache-2.0']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- query:
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type: file
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description: Fasta file(s) to be queried
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pattern: "*.fasta"
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- reference:
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type: file
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description: Fasta file(s) to be used as reference for the query
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ani:
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type: file
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description: Results of the query
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pattern: "*.ani.txt"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@abhi18av"
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