nf-core_modules/modules/hisat2/build/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

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YAML

name: hisat2_build
description: Builds HISAT2 index for reference genome
keywords:
- build
- index
- fasta
- genome
- reference
tools:
- hisat2:
description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
homepage: https://daehwankimlab.github.io/hisat2/
documentation: https://daehwankimlab.github.io/hisat2/manual/
doi: "10.1038/s41587-019-0201-4"
licence: ['MIT']
input:
- fasta:
type: file
description: Reference fasta file
pattern: "*.{fa,fasta,fna}"
- gtf:
type: file
description: Reference gtf annotation file
pattern: "*.{gtf}"
- splicesites:
type: file
description: Splices sites in gtf file
pattern: "*.{txt}"
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- index:
type: file
description: HISAT2 genome index file
pattern: "*.ht2"
authors:
- "@ntoda03"