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77a2895785
* initial commit [ci skip] * remove todo from the module files [ci skip] * add a sample test case [ci skip] * push the latest work [ci skip] * bump kleborate build * test passing with the new build for kleborate [ci skip] * ready for review * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: kleborate
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description: Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC).
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keywords:
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- screening assemblies
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- Klebsiella pneumoniae
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tools:
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- kleborate:
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description: Screening Klebsiella genome assemblies for MLST, sub-species, and other Klebsiella related genes of interest
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homepage: https://github.com/katholt/Kleborate
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documentation: https://github.com/katholt/Kleborate/wiki
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tool_dev_url: https://github.com/katholt/Kleborate
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doi: 10.1038/s41467-021-24448-3
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licence: ['GPL v3 or later (GPL v3+)']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastas:
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type: files
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description: Klebsiella genome assemblies to be screened
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pattern: "*.fasta"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- txt:
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type: file
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description: Result file generated after screening
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pattern: "*.txt"
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authors:
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- "@abhi18av"
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- "@rpetit3"
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