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6913da9d2d
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Start MALT-build * Start MALT build (missing meta files and outputs specS) * Local tests * Correct test map_type * Finished module, just waiting for UNZIP module to finalise tests * Correct tests in preparation for Unzip * Ouptut log file too * Update meta.yml * Rename log file * Rename log file * Remove debugging stuff * Add Unzip module * Linting update * Linting update * Fix input db * Fix db file in cmd * Update modules/malt/build/main.nf * Update modules/malt/build/main.nf * Update main.nf
55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: malt_build
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description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
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keywords:
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- malt
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- alignment
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- metagenomics
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- ancient DNA
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- aDNA
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- palaeogenomics
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- archaeogenomics
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- microbiome
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- database
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tools:
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- malt:
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description: A tool for mapping metagenomic data
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homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
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documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
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tool_dev_url: None
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doi: "10.1038/s41559-017-0446-6"
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licence: ['GPL v3']
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input:
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- fastas:
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type: file
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description: Directory of, or FASTA reference files for indexing
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pattern: "*/|*.fasta"
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- seq_type:
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type: string
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description: Type of input data
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pattern: "DNA|Protein"
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- gff:
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type: file
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description: Directory of, or GFF3 files of input FASTA files
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pattern: "*/|*.gff|*.gff3"
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- map_db:
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type: file
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description: MEGAN .db file from https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html
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pattern:
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- index:
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type: directory
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description: Directory containing MALT database index directory
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pattern: "malt_index/"
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- log:
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type: file
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description: Log file from STD out of malt-build
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pattern: "malt-build.log"
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authors:
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- "@jfy133"
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