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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
34 lines
925 B
YAML
34 lines
925 B
YAML
name: seqtk_subseq
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description: Select only sequences that match the filtering condition
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keywords:
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- filtering,selection
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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tool_dev_url: https://github.com/lh3/seqtk
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licence: ['MIT']
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input:
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- sequences:
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type: file
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description: FASTQ/FASTA file
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pattern: "*.{fq,fq.gz,fa,fa.gz}"
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- filter_list:
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type: file
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description: BED file or a text file with a list of sequence names
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pattern: "*.{bed,lst}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- sequences:
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type: file
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description: FASTQ/FASTA file
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pattern: "*.{fq.gz,fa.gz}"
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authors:
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- "@sidorov-si"
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