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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
31 lines
862 B
YAML
31 lines
862 B
YAML
name: stringtie_merge
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description: Merges the annotation gtf file and the stringtie output gtf files
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keywords:
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- merge
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- gtf
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- reference
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tools:
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- stringtie2:
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description: |
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Transcript assembly and quantification for RNA-Seq
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homepage: https://ccb.jhu.edu/software/stringtie/index.shtml
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documentation: https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual
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input:
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- stringtie_gtf:
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type: file
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description: |
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Stringtie transcript gtf output(s).
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pattern: "*.gtf"
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- annotation_gtf:
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type: file
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description: |
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Annotation gtf file.
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pattern: "*.gtf"
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output:
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- merged_gtf:
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type: map
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description: |
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Merged gtf from annotation and stringtie output gtfs.
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pattern: "*.gtf"
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authors:
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- "@yuukiiwa"
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