nf-core_modules/modules/yara/mapper/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

47 lines
1.2 KiB
YAML

name: yara_mapper
description: Align reads to a reference genome using YARA
keywords:
- align
- genome
- reference
tools:
- yara:
description: Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
homepage: https://github.com/seqan/seqan
documentation: https://github.com/seqan/seqan
tool_dev_url: https://github.com/seqan/seqan
doi: ""
licence: ['https://raw.githubusercontent.com/seqan/seqan/develop/apps/yara/LICENSE']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
- index:
type: file
description: YARA genome index files
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- bam:
type: file
description: Sorted BAM file
pattern: "*.{bam}"
authors:
- "@apeltzer"