mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 13:23:09 +00:00
77a2895785
* initial commit [ci skip] * remove todo from the module files [ci skip] * add a sample test case [ci skip] * push the latest work [ci skip] * bump kleborate build * test passing with the new build for kleborate [ci skip] * ready for review * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
18 lines
569 B
Text
18 lines
569 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { KLEBORATE } from '../../../modules/kleborate/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_kleborate {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['scaffolds_fasta'], checkIfExists: true)
|
|
]
|
|
]
|
|
|
|
KLEBORATE ( input )
|
|
}
|