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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
13 lines
483 B
Text
13 lines
483 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PAIRTOOLS_SELECT } from '../../../../modules/pairtools/select/main.nf' addParams( options: [args:"(pair_type == 'RU') or (pair_type == 'UR') or (pair_type == 'UU')"] )
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workflow test_pairtools_select {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.pairsam", checkIfExists: true) ]
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PAIRTOOLS_SELECT ( input )
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}
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