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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: maltextract
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description: Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
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keywords:
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- malt
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- MaltExtract
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- HOPS
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- alignment
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- metagenomics
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- ancient DNA
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- aDNA
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- palaeogenomics
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- archaeogenomics
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- microbiome
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- authentication
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- damage
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- edit distance
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tools:
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- maltextract:
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description: Java tool to work with ancient metagenomics
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homepage: https://github.com/rhuebler/hops
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documentation: https://github.com/rhuebler/hops
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tool_dev_url: https://github.com/rhuebler/hops
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doi: "https://doi.org/10.1186/s13059-019-1903-0"
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licence: ["GPL 3"]
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input:
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- rma6:
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type: file
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description: RMA6 files from MALT
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pattern: "*.rma6"
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- taxon_list:
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type: file
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description: List of target taxa to evaluate
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pattern: "*.txt"
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- ncbi_dir:
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type: directory
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description: Directory containing NCBI taxonomy map and tre files
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pattern: "${ncbi_dir}/"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- results:
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type: directory
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description: Directory containing MaltExtract text results files
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pattern: "*.rma6"
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authors:
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- "@jfy133"
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