mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
28 lines
1.4 KiB
YAML
28 lines
1.4 KiB
YAML
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: dc1a09ac6371aab7c50d1a554baa06d3
|
|
|
|
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 898cb0a6616897d8ada90bab53bf0837
|
|
|
|
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_metrics
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_metrics -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 898cb0a6616897d8ada90bab53bf0837
|
|
- path: output/gatk4/test.metrics
|
|
contains: "[ ## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics ]"
|