mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
35 lines
927 B
YAML
35 lines
927 B
YAML
name: cutadapt
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on:
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push: {}
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pull_request:
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paths: software/cutadapt/*
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jobs:
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run_ci_test:
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runs-on: ubuntu-latest
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env:
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NXF_ANSI_LOG: false
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steps:
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- uses: actions/checkout@v2
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- name: Checkout submodules
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shell: bash
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run: |
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auth_header="$(git config --local --get http.https://github.com/.extraheader)"
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git submodule sync --recursive
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git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Test module with paired-end data
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run: |
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cd software/cutadapt/test/
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nextflow run .
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- name: Test module with single-end data
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run: |
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cd software/cutadapt/test/
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nextflow run . --single_end
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