mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
94619a3faf
* add annotate * add models * add compound * add score * update annotate recipe * update meta and main * main updates * add test for annotate * update all tests * refactor * update tests * fix conda issue * review suggestions
49 lines
1.2 KiB
YAML
49 lines
1.2 KiB
YAML
name: "genmod_models"
|
|
description: annotate models of inheritance
|
|
keywords:
|
|
- models
|
|
- genmod
|
|
tools:
|
|
- "genmod":
|
|
description: "Annotate genetic inheritance models in variant files"
|
|
homepage: "https://github.com/Clinical-Genomics/genmod"
|
|
documentation: "https://github.com/Clinical-Genomics/genmod"
|
|
tool_dev_url: "https://github.com/moonso"
|
|
doi: ""
|
|
licence: "['MIT']"
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- input_vcf:
|
|
type: file
|
|
description: vcf file
|
|
pattern: "*.{vcf}"
|
|
- reduced_penetrance:
|
|
type: file
|
|
description: file with gene ids that have reduced penetrance
|
|
pattern: "*.{tsv}"
|
|
- family_file:
|
|
type: file
|
|
description: ped file
|
|
pattern: "*.{ped}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: Output VCF file
|
|
pattern: "*.{vcf}"
|
|
|
|
authors:
|
|
- "@ramprasadn"
|