nf-core_modules/modules/last/lastdb/meta.yml

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YAML

name: last_lastdb
description: Prepare sequences for subsequent alignment with lastal.
keywords:
- LAST
- index
- fasta
- fastq
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/lastdb.rst
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastx:
type: file
description: >
Sequence file in FASTA or FASTQ format.
May be compressed with gzip.
pattern: "*.{fasta,fasta.gz,fastq,fastq.gz}"
output:
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- index:
type: directory
description: directory containing the files of the LAST index
pattern: "lastdb/"
authors:
- "@charles-plessy"