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39 lines
1.1 KiB
YAML
39 lines
1.1 KiB
YAML
name: rseqc_inferexperiment
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description: Infer strandedness from sequencing reads
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keywords:
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- rnaseq
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- experiment
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tools:
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- rseqc:
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description: |
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RSeQC package provides a number of useful modules that can comprehensively evaluate
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high throughput sequence data especially RNA-seq data.
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homepage: http://rseqc.sourceforge.net/
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documentation: http://rseqc.sourceforge.net/
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doi: 10.1093/bioinformatics/bts356
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: the bam file to calculate statistics of
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pattern: "*.{bam}"
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- bed:
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type: file
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description: a bed file for the reference gene model
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pattern: "*.{bed}"
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output:
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- txt:
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type: file
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description: infer_experiment results report
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pattern: "*.infer_experiment.txt"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@drpatelh"
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- "@kevinmenden"
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