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d07d270743
* Create module antismashlitedownloaddatabases * Corrected user-specification of database directory * Updated test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix typo in test.yml * Feed database files via docker/singularity mount) * Add external db file mounts to the containers * Fixed docker command in main.nf * Apply prettier * Apply prettier and add PWD * Add more output to test.yml * Add more output paths to test.yml * Fixed test.yml * Apply suggestions from code review Add documentation of why we need to mount files to the containers. Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Fix code linting errors (remove trailing whitespaces) * Fix code linting error (remove trailing whitespace) * Fix errors from Prettier linting Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
14 lines
728 B
YAML
14 lines
728 B
YAML
- name: antismash antismashlitedownloaddatabases test_antismash_antismashlitedownloaddatabases
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command: nextflow run tests/modules/antismash/antismashlitedownloaddatabases -entry test_antismash_antismashlitedownloaddatabases -c tests/config/nextflow.config
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tags:
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- antismash/antismashlitedownloaddatabases
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- antismash
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files:
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- path: output/antismash/versions.yml
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md5sum: e2656c8d2bcc7469eba40eb1ee5c91b3
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- path: output/antismash/antismash_db
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- path: output/antismash/antismash_db/clusterblast
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- path: output/antismash/antismash_db/clustercompare
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- path: output/antismash/antismash_db/pfam
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- path: output/antismash/antismash_db/resfam
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- path: output/antismash/antismash_db/tigrfam
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