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31 lines
1.3 KiB
YAML
31 lines
1.3 KiB
YAML
- name: gatk4 samtofastq test_gatk4_samtofastq_single_end
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command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config
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tags:
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- gatk4
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- gatk4/samtofastq
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files:
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- path: output/gatk4/test.fastq.gz
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md5sum: 50ace41d4c24467f24f8b929540a7797
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- path: output/gatk4/versions.yml
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- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end
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command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config
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tags:
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- gatk4
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- gatk4/samtofastq
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files:
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- path: output/gatk4/test_1.fastq.gz
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md5sum: cfea607c9d75fd9ea9704780ad3a499c
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- path: output/gatk4/test_2.fastq.gz
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md5sum: 613bf64c023609e1c62ad6ce9e4be8d7
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- path: output/gatk4/versions.yml
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- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end_stubs
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command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end_stubs -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config -stub-run
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tags:
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- gatk4
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- gatk4/samtofastq
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files:
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- path: output/gatk4/test_1.fastq.gz
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- path: output/gatk4/test_2.fastq.gz
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- path: output/gatk4/versions.yml
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