mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
6400317623
* initial commit * tested Co-authored-by: Cipriano <rrn8@cdc.gov> Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
29 lines
927 B
Text
29 lines
927 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GATK4_SELECTVARIANTS } from '../../../../modules/gatk4/selectvariants/main.nf'
|
|
|
|
// Basic parameters with uncompressed VCF input
|
|
workflow test_gatk4_selectvariants_vcf_input {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true),
|
|
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_idx'], checkIfExists: true)
|
|
]
|
|
|
|
GATK4_SELECTVARIANTS ( input)
|
|
}
|
|
|
|
// Basic parameters with compressed VCF input
|
|
workflow test_gatk4_selectvariants_gz_input {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz_tbi'], checkIfExists: true)
|
|
]
|
|
|
|
GATK4_SELECTVARIANTS ( input )
|
|
}
|