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19 lines
494 B
Text
19 lines
494 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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params.out_dir = "test_output"
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params.fastqc_args = ''
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params.publish_dir_mode = "copy"
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params.bedtools_merge_args = '' //''-s -c 6 -o distinct'
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include BEDTOOLS_MERGE from '../main.nf' params(params)
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// Define input channels
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ch_input = Channel.fromPath('./input_data/A.bed')
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//ch_input = Channel.fromPath('./input_data/JK2067_downsampled_s0.1.bam')
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// Run the workflow
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workflow {
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BEDTOOLS_MERGE(ch_input, params.bedtools_merge_args)
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}
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