mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
19 lines
739 B
YAML
19 lines
739 B
YAML
- name: gatk4 samtofastq test_gatk4_samtofastq_single_end
|
|
command: nextflow run tests/software/gatk4/samtofastq -entry test_gatk4_samtofastq_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/samtofastq
|
|
files:
|
|
- path: output/gatk4/test.fastq.gz
|
|
md5sum: 50ace41d4c24467f24f8b929540a7797
|
|
|
|
- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end
|
|
command: nextflow run tests/software/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/samtofastq
|
|
files:
|
|
- path: output/gatk4/test_1.fastq.gz
|
|
md5sum: cfea607c9d75fd9ea9704780ad3a499c
|
|
- path: output/gatk4/test_2.fastq.gz
|
|
md5sum: 613bf64c023609e1c62ad6ce9e4be8d7
|