mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
c99ab09f8d
* Add kraken2 pigz multi-tool container for compressing output fastq files * Add untar to pytest config * Add untar process to kraken2 tests * Remove unneeded tags
29 lines
1 KiB
YAML
29 lines
1 KiB
YAML
- name: kraken2 run single-end
|
|
command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- kraken2
|
|
- kraken2/run
|
|
files:
|
|
- path: output/kraken2/test.classified.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.unclassified.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.kraken2.report.txt
|
|
md5sum: 4227755fe40478b8d7dc8634b489761e
|
|
|
|
- name: kraken2 run paired-end
|
|
command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- kraken2
|
|
- kraken2/run
|
|
files:
|
|
- path: output/kraken2/test.classified_1.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.classified_2.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.unclassified_1.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.unclassified_2.fastq.gz
|
|
should_exist: true
|
|
- path: output/kraken2/test.kraken2.report.txt
|
|
md5sum: 4227755fe40478b8d7dc8634b489761e
|