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4575e5455c
* New last/split module to find split alignments. The `last-split` tool distributed with [LAST](https://gitlab.com/mcfrith/last) finds split or spliced alignments in a MAF file that is produced with, for example, LAST `lastal` command. This new module is part of the work discribed in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Update software/last/split/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
13 lines
381 B
Text
13 lines
381 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { LAST_SPLIT } from '../../../../software/last/split/main.nf' addParams( options: ['suffix':'.split'] )
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workflow test_last_split {
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input = [ [ id:'contigs.genome' ], // meta map
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file(params.test_data['sarscov2']['genome']['contigs_genome_maf_gz'], checkIfExists: true) ]
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LAST_SPLIT ( input )
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}
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