nf-core_modules/tests/software/last/split/test.yml at 4d711a1428fe2ac20c9100cf9217922b87e0f013 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

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aleksandrabliznina 4575e5455c

New last/split module to find split alignments. (#511 )

* New last/split module to find split alignments.

The `last-split` tool distributed with [LAST](https://gitlab.com/mcfrith/last)
finds split or spliced alignments in a MAF file that is produced with, for
example, LAST `lastal` command.

This new module is part of the work discribed in Issue #464. During this
development, we fix the versiob of LAST to 1219 to ensure consistency. We will
upgrade it later.

* Update software/last/split/main.nf

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-05-24 20:15:57 +01:00

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 - name: last split test_last_split
   command: nextflow run tests/software/last/split -entry test_last_split -c tests/config/nextflow.config
   tags:
     - last
     - last/split
   files:
     - path: output/last/contigs.genome.split.maf.gz
       md5sum: 2a177444f63c9294767a67a0247f0f05