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2dba72dd14
* Update test for trimgalore * Fix picard markduplicate test * Fix tests for picard mergesamfiles * Fix checksum for markduplicates * Fix multiplemetrics and wgsmetrics * Fix checksum for mergesamfiles
21 lines
713 B
Text
21 lines
713 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_MARKDUPLICATES } from '../../../../software/picard/markduplicates/main.nf' addParams( options: [:] )
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workflow test_picard_markduplicates_sorted_bam {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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PICARD_MARKDUPLICATES ( input )
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}
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workflow test_picard_markduplicates_unsorted_bam {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
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]
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PICARD_MARKDUPLICATES ( input )
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}
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