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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
51 lines
1.8 KiB
YAML
51 lines
1.8 KiB
YAML
- name: shovill with spades
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command: nextflow run ./tests/software/shovill -entry test_shovill -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/contigs.gfa
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md5sum: 277af5d8ae8a0d2432db59a316226828
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- path: output/shovill/spades.fasta
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md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- name: shovill with megahit
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command: nextflow run ./tests/software/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.fastg
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- path: output/shovill/megahit.fasta
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- path: output/shovill/shovill.log
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- name: shovill with skesa
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command: nextflow run ./tests/software/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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- path: output/shovill/shovill.corrections
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/shovill/skesa.fasta
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md5sum: 8157837dbe8315922f588dafa7af5ef8
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# MD5sum not reproducible (timestamp)
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- path: output/shovill/contigs.fa
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- path: output/shovill/shovill.log
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- name: shovill with velvet
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command: nextflow run ./tests/software/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
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tags:
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- shovill
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files:
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# MD5sum not reproducible (timestamp, contig order)
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- path: output/shovill/contigs.fa
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- path: output/shovill/contigs.LastGraph
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- path: output/shovill/shovill.corrections
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- path: output/shovill/shovill.log
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- path: output/shovill/velvet.fasta
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