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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: msisensor_scan
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description: Scan a reference genome to get microsatellite & homopolymer information
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keywords:
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- homoploymer,microsatellite
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tools:
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- msisensor:
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description: MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
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homepage: https://github.com/ding-lab/msisensor
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documentation: None
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tool_dev_url: None
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doi: "10.1093/bioinformatics/btt755"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: FASTA file
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pattern: "*.{fa,fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: MSIsensor scan output file of homopolymers & minisatellites
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pattern: "*.msisensor_scan.txt"
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authors:
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- "@kevbrick"
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