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33 lines
710 B
Text
33 lines
710 B
Text
params {
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outdir = "output/"
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publish_dir_mode = "copy"
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enable_conda = false
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singularity_pull_docker_container = false
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}
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process {
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cpus = 2
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memory = 3.GB
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time = 2.h
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}
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if ("$PROFILE" == "singularity") {
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singularity.enabled = true
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singularity.autoMounts = true
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} else if ("$PROFILE" == "conda") {
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params.enable_conda = true
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} else {
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docker.enabled = true
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docker.userEmulation = true
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docker.runOptions = "--platform linux/x86_64"
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}
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// Increase time available to build Conda environment
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conda { createTimeout = "120 min" }
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// Load test_data.config containing paths to test data
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includeConfig 'test_data.config'
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manifest {
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nextflowVersion = '!>=21.10.0'
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}
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