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3b600af50e
* feat: update gatk4 from 4.2.0.0 to 4.2.3.0 * update md5checksum * commit all files * actually checksum was good, but I suspect something fishy with the tests
28 lines
1.3 KiB
YAML
28 lines
1.3 KiB
YAML
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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- path: output/gatk4/test.segmentation.table
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md5sum: 91f28bfe4727a3256810927fc5eba92f
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