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* Samtools fixmate module * Update modules/samtools/fixmate/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update main.nf * Update modules/samtools/fixmate/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update meta.yml Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
14 lines
407 B
Text
14 lines
407 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_FIXMATE } from '../../../../modules/samtools/fixmate/main.nf' addParams( options: [args:'-r -c -m'] )
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workflow test_samtools_fixmate {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true) ]
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SAMTOOLS_FIXMATE ( input )
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}
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