mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
24f0bdd14e
* added module seqkit replace * added when * removed extra line * Update modules/seqkit/replace/main.nf Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * Updated meta * updated indents Co-authored-by: Cipriano <rrn8@cdc.gov> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: seqkit_replace
|
|
description: Use seqkit to find/replace strings within sequences and sequence headers
|
|
keywords:
|
|
- seqkit
|
|
- replace
|
|
tools:
|
|
- seqkit:
|
|
description: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
|
|
homepage: https://bioinf.shenwei.me/seqkit/usage/
|
|
documentation: https://bioinf.shenwei.me/seqkit/usage/
|
|
tool_dev_url: https://github.com/shenwei356/seqkit/
|
|
doi: "10.1371/journal.pone.016396"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastx:
|
|
type: file
|
|
description: fasta/q file
|
|
pattern: "*.{fasta,fastq,fa,fq,fas,fna,faa}*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- fastx:
|
|
type: file
|
|
description: fasta/q file with replaced values
|
|
pattern: "*.{fasta,fastq,fa,fq,fas,fna,faa}*"
|
|
|
|
authors:
|
|
- "@mjcipriano"
|