millironx/nf-core_modules
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nf-core_modules/tests/modules/cellranger
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James A. Fellows Yates e080f4c8ac
Untar unzip meta (#1408) 
* fix: remove left-over unnecessary code

* Adds support for meta lists for unzip and untar

* Fix test inputs

* Update all modules to support extraction of decompressed file from untar/unzip new meta + file tuple

* Update all modules to support extraction of decompressed file from untar/unzip new meta + file tuple

* Fix MALTEXTRACT/AMPS

* Fix further modules

* Fix cellranger

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-03-21 14:49:28 +01:00
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count Add bcl2fastq2 to cellranger dockerfile (#1115) 2022-01-25 19:58:22 +01:00
mkfastq Untar unzip meta (#1408) 2022-03-21 14:49:28 +01:00
mkgtf Add Cell Ranger mkfastq, mkgtf, and count (#979) 2021-12-02 14:27:20 +00:00
mkref Add bcl2fastq2 to cellranger dockerfile (#1115) 2022-01-25 19:58:22 +01:00