mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
38 lines
1 KiB
YAML
38 lines
1 KiB
YAML
name: homer_makeucscfile
|
|
description: Create a UCSC bed graph with the HOMER suite
|
|
keywords:
|
|
- peaks
|
|
- bed
|
|
- bedGraph
|
|
tools:
|
|
- homer:
|
|
description: |
|
|
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
|
|
documentation: http://homer.ucsd.edu/homer/
|
|
doi: 10.1016/j.molcel.2010.05.004.
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- tagDir:
|
|
type: directory
|
|
description: "The 'Tag Directory'"
|
|
pattern: "tagDir"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bedGraph:
|
|
type: file
|
|
description: The UCSC bed graph
|
|
pattern: "tag_dir/*ucsc.bedGraph.gz"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@EMiller88"
|