mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
53 lines
1.5 KiB
YAML
53 lines
1.5 KiB
YAML
name: malt_run
|
|
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
|
|
keywords:
|
|
- malt
|
|
- alignment
|
|
- metagenomics
|
|
- ancient DNA
|
|
- aDNA
|
|
- palaeogenomics
|
|
- archaeogenomics
|
|
- microbiome
|
|
tools:
|
|
- malt:
|
|
description: A tool for mapping metagenomic data
|
|
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
|
|
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
|
|
tool_dev_url: None
|
|
doi: "10.1038/s41559-017-0446-6"
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- fastqs:
|
|
type: file
|
|
description: Input FASTQ files
|
|
pattern: "*.{fastq.gz,fq.gz}"
|
|
- mode:
|
|
type: string
|
|
description: Program mode
|
|
pattern: 'Unknown|BlastN|BlastP|BlastX|Classifier'
|
|
- index:
|
|
type: directory
|
|
description: Index/database directory from malt-build
|
|
pattern: '*/'
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- rma6:
|
|
type: file
|
|
description: MEGAN6 RMA6 file
|
|
pattern: "*.rma6"
|
|
- sam:
|
|
type: file
|
|
description: Alignment files in Tab, Text or MEGAN-compatible SAM format
|
|
pattern: "*.{tab,txt,sam}"
|
|
- log:
|
|
type: file
|
|
description: Log of verbose MALT stdout
|
|
pattern: "malt-run.log"
|
|
|
|
authors:
|
|
- "@jfy133"
|