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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
629 B
Text
17 lines
629 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMER_HMMALIGN } from '../../../../modules/hmmer/hmmalign/main.nf' addParams( options: [:] )
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workflow test_hmmer_hmmalign {
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input = [
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[ id:'test' ], // meta map
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file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/e_coli_k12_16s.fna') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
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]
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hmm = file('https://raw.githubusercontent.com/erikrikarddaniel/test-datasets/modules/data/delete_me/bac.16S_rRNA.hmm')
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HMMER_HMMALIGN ( input, hmm )
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}
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