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a8b0fce8ce
* adding tailfindr module * replacing the container * removing todo * removing todo and fixing meta.yml * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/tailfindr/test.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update main.nf * Update meta.yml * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update meta.yml * Update main.nf * adding pytest * Update main.nf * Update modules/tailfindr/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update test.yml * Update main.nf * Update main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: "tailfindr"
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description: Estimating poly(A)-tail lengths from basecalled fast5 files produced by Nanopore sequencing of RNA and DNA
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keywords:
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- polyA
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- fast5
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tools:
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- "tailfindr":
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description: "An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads."
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homepage: "https://github.com/adnaniazi/tailfindr"
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documentation: "https://github.com/adnaniazi/tailfindr/blob/master/README.md"
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tool_dev_url: "https://github.com/adnaniazi/tailfindr"
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doi: "10.1261/rna.071332.119"
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licence: "['AGPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- fast5:
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type: file
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description: fast5 file
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pattern: "*.fast5"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- csv_gz:
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type: file
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description: Compressed csv file
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pattern: "*.csv.gz"
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authors:
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- "@lucacozzuto"
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