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nf-core_modules/modules/checkm/lineagewf
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James A. Fellows Yates 03de60e6fa
Add CHECKM/QA (#2137) 
* Bump checkM version and add support for pre-defined database

* Add markfile output to checkm/lineagewf and add checkm/qa

* Remove unnecessary BAM from tests

* Fix channels to ensure single meta

* Blah

* Use secondary name evwyhere

* Remove second incovcatiojn

* Don't run module directrly for join

* And for the other test

* Correct module name

* Fix name again

* Try and fix out_format 9 not being picked up

* Contains to matches to allow regex

* Fix tests (finally)

* Fix verisoning

* [automated] Fix linting with Prettier

* Update modules/checkm/qa/main.nf

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

Co-authored-by: nf-core-bot <core@nf-co.re>
Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
2022-09-30 15:50:47 +02:00
..
main.nf Add CHECKM/QA (#2137) 2022-09-30 15:50:47 +02:00
meta.yml Add CHECKM/QA (#2137) 2022-09-30 15:50:47 +02:00