mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 22:23:09 +00:00
f2264c1052
* added scramble/clusteridentifier * linting * added cluster_analysis * added a comment to the mei ref * added reference comments * linting
51 lines
1.3 KiB
YAML
51 lines
1.3 KiB
YAML
name: "scramble_clusteridentifier"
|
|
description: The cluster_identifier tool of Scramble identifies soft clipped clusters
|
|
keywords:
|
|
- bam
|
|
- cram
|
|
- soft-clipped clusters
|
|
tools:
|
|
- "scramble":
|
|
description: "Soft Clipped Read Alignment Mapper"
|
|
homepage: "https://github.com/GeneDx/scramble"
|
|
documentation: "https://github.com/GeneDx/scramble"
|
|
tool_dev_url: "https://github.com/GeneDx/scramble"
|
|
doi: ""
|
|
licence: "['CC']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- input:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
- input_index:
|
|
type: file
|
|
description: Index of the BAM/CRAM file
|
|
pattern: "*.{bai,crai}"
|
|
- fasta:
|
|
type: file
|
|
description: The reference FASTA file (mandatory when using CRAM files)
|
|
pattern: "*.{fasta,fa}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- clusters:
|
|
type: file
|
|
description: Tab-delimited file containing the soft-clipped clusters
|
|
pattern: "*.clusters.txt"
|
|
|
|
authors:
|
|
- "@nvnieuwk"
|