nf-core_modules/tests/modules/glimpse/chunk/test.yml at 4eed099a12a7d586ce830a662a33a9df5bd67a24 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-23 03:28:17 +00:00

Louis LENEZET 01d6d4c286

Creation of Glimpse Chunk (#1985 )

* Creation of Glimpse Chunk
Add sub tools chunk with configuration and needed files for unitest.

* Code linting correction

* Prettier ran
Newline deleted in nextflow.config

* New final line and white spaces

* Change Pytest.yml to work as a subtool.

* Control for the parameters deleted.
Control for the size/count of the window and buffer not needed.
They have some defaults value.

* Changed the different recommended part by @nvnieuwk

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

2022-09-01 10:01:49 +02:00

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 - name: glimpse chunk test_glimpse_chunk
   command: nextflow run ./tests/modules/glimpse/chunk -entry test_glimpse_chunk -c ./tests/config/nextflow.config  -c ./tests/modules/glimpse/chunk/nextflow.config
   tags:
     - glimpse
     - glimpse/chunk
   files:
     - path: output/glimpse/test.txt
       md5sum: c690cdcc7aa086bb85431bb2b193176f