nf-core_modules/tests/modules/hisat2/align/test.yml
Harshil Patel 4eed099a12
Bump HISAT2 version to 2.2.1 in all modules (#2139)
* Fix broken Quast module and bump MultiQC version in dumpsoftwareversions

* Bump HISAT2 version to 2.2.1

* Remove empty md5sums

* Remove empty md5sums

* Remove empty md5sums
2022-09-30 20:34:06 +01:00

53 lines
2.3 KiB
YAML

- name: hisat2 align test_hisat2_align_single_end
command: nextflow run ./tests/modules/hisat2/align -entry test_hisat2_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/hisat2/align/nextflow.config
tags:
- hisat2
- hisat2/align
files:
- path: output/hisat2/test.hisat2.summary.log
md5sum: 7b8a9e61b7646da1089b041333c41a87
- path: output/hisat2/genome.splice_sites.txt
- path: output/hisat2/test.bam
- path: output/hisat2/hisat2/genome.5.ht2
md5sum: 91198831aaba993acac1734138c5f173
- path: output/hisat2/hisat2/genome.7.ht2
md5sum: 9013eccd91ad614d7893c739275a394f
- path: output/hisat2/hisat2/genome.1.ht2
md5sum: 057cfa8a22b97ee9cff4c8d342498803
- path: output/hisat2/hisat2/genome.2.ht2
md5sum: 47b153cd1319abc88dda532462651fcf
- path: output/hisat2/hisat2/genome.6.ht2
md5sum: 265e1284ce85686516fae5d35540994a
- path: output/hisat2/hisat2/genome.3.ht2
md5sum: 4ed93abba181d8dfab2e303e33114777
- path: output/hisat2/hisat2/genome.8.ht2
md5sum: 33cdeccccebe80329f1fdbee7f5874cb
- path: output/hisat2/hisat2/genome.4.ht2
md5sum: c25be5f8b0378abf7a58c8a880b87626
- name: hisat2 align test_hisat2_align_paired_end
command: nextflow run ./tests/modules/hisat2/align -entry test_hisat2_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/hisat2/align/nextflow.config
tags:
- hisat2
- hisat2/align
files:
- path: output/hisat2/test.hisat2.summary.log
md5sum: 9839b31db795958cc4b70711a3414e9c
- path: output/hisat2/genome.splice_sites.txt
- path: output/hisat2/test.bam
- path: output/hisat2/hisat2/genome.5.ht2
md5sum: 91198831aaba993acac1734138c5f173
- path: output/hisat2/hisat2/genome.7.ht2
md5sum: 9013eccd91ad614d7893c739275a394f
- path: output/hisat2/hisat2/genome.1.ht2
md5sum: 057cfa8a22b97ee9cff4c8d342498803
- path: output/hisat2/hisat2/genome.2.ht2
md5sum: 47b153cd1319abc88dda532462651fcf
- path: output/hisat2/hisat2/genome.6.ht2
md5sum: 265e1284ce85686516fae5d35540994a
- path: output/hisat2/hisat2/genome.3.ht2
md5sum: 4ed93abba181d8dfab2e303e33114777
- path: output/hisat2/hisat2/genome.8.ht2
md5sum: 33cdeccccebe80329f1fdbee7f5874cb
- path: output/hisat2/hisat2/genome.4.ht2
md5sum: c25be5f8b0378abf7a58c8a880b87626