mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
797 B
Text
17 lines
797 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
//keep --no-verson argument, otherwise md5 will change on each execution
|
|
include { BCFTOOLS_MERGE } from '../../../../modules/bcftools/merge/main.nf' addParams( options: ['args': '--force-samples --no-version'] )
|
|
|
|
workflow test_bcftools_merge {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test3_vcf_gz'], checkIfExists: true) ],
|
|
[ file(params.test_data['sarscov2']['illumina']['test2_vcf_gz_tbi'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test3_vcf_gz_tbi'], checkIfExists: true) ]
|
|
]
|
|
|
|
BCFTOOLS_MERGE ( input )
|
|
}
|