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a813e2e3a6
* local tests and linting passing (#585) * fix: picard filtersamreads input (#610) * Move readlist into same input channel as bam * Update test reflecting input restructuring * Update tests/modules/picard/filtersamreads/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix test Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Added module arriba (#611) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml * Added module arriba * Changes in test configs * Added module Arriba for fusion detection * Fixed review comments * Added an output option for discarded fusions * Resolved some conflits * conflicts * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * added test for new header * enhance module fastp: add `save_merged` (#598) (#614) * enhance module fastp: add `save_merged` (#598) * removed md5sum checks from log and json * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: praveenraj2018 <43108054+praveenraj2018@users.noreply.github.com>
26 lines
1 KiB
YAML
26 lines
1 KiB
YAML
- name: bcftools reheader test_bcftools_reheader_update_sequences
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command: nextflow run tests/modules/bcftools/reheader -entry test_bcftools_reheader_update_sequences -c tests/config/nextflow.config
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tags:
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- bcftools/reheader
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- bcftools
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files:
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- path: output/bcftools/test.updated.vcf.gz
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md5sum: 9e29f28038bfce77ee00022627209ed6
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- name: bcftools reheader test_bcftools_reheader_new_header
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command: nextflow run tests/modules/bcftools/reheader -entry test_bcftools_reheader_new_header -c tests/config/nextflow.config
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tags:
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- bcftools/reheader
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- bcftools
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files:
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- path: output/bcftools/test.updated.vcf.gz
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md5sum: f7f536d889bbf5be40243252c394ee1f
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- name: bcftools reheader test_bcftools_reheader_new_header_update_sequences
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command: nextflow run tests/modules/bcftools/reheader -entry test_bcftools_reheader_new_header_update_sequences -c tests/config/nextflow.config
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tags:
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- bcftools/reheader
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- bcftools
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files:
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- path: output/bcftools/test.updated.vcf.gz
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md5sum: 9e29f28038bfce77ee00022627209ed6
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