nf-core_modules/tests/modules/bwamem2/mem/test.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

35 lines
1.4 KiB
YAML

- name: bwamem2 mem single-end
command: nextflow run ./tests/modules/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
tags:
- bwamem2
- bwamem2/mem
files:
- path: ./output/bwamem2/test.bam
- path: ./output/index/bwamem2/genome.fasta.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwamem2/genome.fasta.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwamem2/genome.fasta.0123
md5sum: b02870de80106104abcb03cd9463e7d8
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
md5sum: d097a1b82dee375d41a1ea69895a9216
- path: ./output/index/bwamem2/genome.fasta.ann
md5sum: c32e11f6c859f166c7525a9c1d583567
- name: bwamem2 mem paired-end
command: nextflow run ./tests/modules/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
tags:
- bwamem2
- bwamem2/mem
files:
- path: ./output/bwamem2/test.bam
- path: ./output/index/bwamem2/genome.fasta.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwamem2/genome.fasta.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwamem2/genome.fasta.0123
md5sum: b02870de80106104abcb03cd9463e7d8
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
md5sum: d097a1b82dee375d41a1ea69895a9216
- path: ./output/index/bwamem2/genome.fasta.ann
md5sum: c32e11f6c859f166c7525a9c1d583567