nf-core_modules/tests/modules/gffread/test.yml at 4f0b02b7b54fab6164164b9067e2fc70460f0b8f - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 13:43:09 +00:00

José Fernández Navarro e9c57083a0

Fix bug in gffread (#686 )

* Fix bug in gffread that would cause it to fail if the input has .gtf as extension

* Update test.yml

* Update meta file

* Update main.nf

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-09-15 19:55:08 +01:00

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 - name: gffread
   command: nextflow run ./tests/modules/gffread/ -entry test_gffread -c tests/config/nextflow.config
   tags:
     - gffread
   files:
     - path: ./output/gffread/genome.out.gtf
       md5sum: fcbf5744ed806e47768bc456fa043263