mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
217303f5c1
* Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
23 lines
717 B
YAML
23 lines
717 B
YAML
- name: stringtie forward-strand merge
|
|
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config
|
|
tags:
|
|
- stringtie
|
|
- stringtie/merge
|
|
files:
|
|
- path: ./output/test_stringtie_forward_merge/stringtie.merged.gtf
|
|
contains:
|
|
- 'stringtie'
|
|
- 'merge'
|
|
- 'chr22'
|
|
|
|
- name: stringtie reverse-strand merge
|
|
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
|
|
tags:
|
|
- stringtie
|
|
- stringtie/merge
|
|
files:
|
|
- path: ./output/test_stringtie_reverse_merge/stringtie.merged.gtf
|
|
contains:
|
|
- 'stringtie'
|
|
- 'merge'
|
|
- 'chr22'
|