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217303f5c1
* Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
23 lines
717 B
YAML
23 lines
717 B
YAML
- name: stringtie forward-strand merge
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command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: ./output/test_stringtie_forward_merge/stringtie.merged.gtf
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contains:
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- 'stringtie'
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- 'merge'
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- 'chr22'
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- name: stringtie reverse-strand merge
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command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: ./output/test_stringtie_reverse_merge/stringtie.merged.gtf
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contains:
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- 'stringtie'
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- 'merge'
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- 'chr22'
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