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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.3 KiB
YAML
44 lines
1.3 KiB
YAML
name: seqtk_sample
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description: Subsample reads from FASTQ files
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keywords:
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- sample
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences.
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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tool_dev_url: https://github.com/lh3/seqtk
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
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pattern: "*.{fastq.gz}"
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- sample_size:
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type: value
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description: Number of reads to sample.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- reads:
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type: file
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description: Subsampled FastQ files, 1 for single-end data or 2 for paired-end data.
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pattern: "*.{fastq.gz}"
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authors:
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- "@kaurravneet4123"
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- "@sidorov-si"
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